Core hunter 3: flexible core subset selection

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August undefined, 2024

Webselection HermanDeBeukelaer1*,GuyFDavenport2andVeerleFack1 Abstract ... times core collections are sampled based on a combi-nation of both genotypes and phenotypes [5–7]. Many WebSep 1, 2009 · Notably, Core Hunter is able to select significantly smaller core subsets, which retain all unique alleles from a reference collection, than state-of-the-art algorithms. Core Hunter is...

Core Hunter 3: Flexible core subset selection - ResearchGate

WebNov 23, 2012 · Core Hunter was developed as a new, very flexible framework for selecting core collections . Like MSTRAT, Core Hunter treats core selection as a formal … http://download.corehunter.org/products/1.0.0-SNAPSHOT/index.html dcu raven

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http://www.corehunter.org/data.html WebConclusions: In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or diversity, with improved … WebOct 20, 2016 · Implementations of specific components are included for subset selection, such as a predefined solution type, generic problem definition and several subset neighbourhoods used to modify the set of selected items. bc campus map bakersfield

corehunter: Multi-Purpose Core Subset Selection

Core Hunter: An algorithm for sampling genetic resources based …

WebCore Hunter 3 supports multiple types of genetic marker data, phenotypic traits and precomputed distance matrices. Data can be loaded from files and, when using the R … WebCore Hunter 3. Multi-purpose core subset selection. Choose your operating system to download the application in zip file. To install, simply unzip the file into your applications … bc campus mapWebCore Hunter is a flexible tool to sample diverse, representative subsets from large germplasm collections, with minimum redundancy. Such so-called core collections have applications in plant breeding and genetic resource management in general.In addition, CH3 is an improvement over CH2, with the option to use genetic marker data or phenotypic … bc canada disability benefits

"WebFeb 3, 2024 · Core Hunter’s multi-strategy optimizes allele coverage and the distance criterion under a 30% sampling intensity (weight: A–NE, 0.7; CV, 0.3 and E–NE, 0.5; CV, 0.5), which is superior to other strategies and was selected as the best method. " - Core hunter 3: flexible core subset selection

Core hunter 3: flexible core subset selection

WebThe unweighted pair-group average, Ward’s and the complete linkage methods of hierarchical clustering combined with three sampling strategies are proposed to construct core collections in a procedure of stepwise clustering. A homogeneous test and t -tests are suggested for use in testing variances and means, respectively. WebMay 31, 2024 · Core Hunter 3: flexible core subset selection, BMC Bioinformatics 10.1186/s12859-018-2209-z DeepDyve Get 20M+ Full-Text Papers For Less Than …

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WebCore Hunter 3 Multi-purpose core subset selection Core Hunter 3 < Home R Package The package corehunter is available on CRAN and can be installed with > install.packages("corehunter") Afterwards, load the package > library(corehunter) and your genotypes, phenotypes and/or distance matrix, for example using one of the following … WebCore Hunter 3: Flexible core subset selection Article Full-text available May 2024 Herman De Beukelaer Guy Davenport Veerle Fack Background: Core collections provide genebank curators and...

http://www.corehunter.org/v2/ WebMay 31, 2024 · In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or diversity, with improved …

WebNov 23, 2012 · Background: Sampling core subsets from genetic resources while maintaining as much as possible the genetic diversity of the original collection is an … WebCore Hunter is a flexible tool to sample diverse, representative subsets from large germplasm collections, with minimum redundancy. Such so-called core collections …

WebApr 8, 2024 · corehunter: Multi-Purpose Core Subset Selection Core Hunter is a tool to sample diverse, representative subsets from large germplasm collections, with minimum …

WebAlthough there are a number of useful methods for selecting a core collection, core hunter software [ 51] is a highly effective and flexible tool for sampling genetic resources and establishing core subsets. It is a mixed replica search including both distance measures and allelic diversity indices [ 51 ]. bc camping parkshttp://www.corehunter.org/r.html bc camping opening datesWebCore Hunter is a program for sampling genetic resources. Users can specify the sampling intensity and which genetic measures will be used for selection criteria. For instance, a … dcu take overWebMay 31, 2024 · Conclusions: In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or … bc campus map pdfWebApr 8, 2024 · Core Hunter is a tool to sample diverse, representative subsets from large germplasm collections, with minimum redundancy. Such so-called core collections have applications in plant breeding and genetic resource management in general. Core Hunter can construct cores based on dcu to navanWebCore Hunter is a program for sampling genetic resources. Users can specify the sampling intensity and which genetic measures will be used for selection criteria. For instance, a core subset could be selected that best maximizes the average modified Rogers’ distance, or one that maximizes the Shannon’s diversity index. dcu tim drakeWebMay 2, 2024 · coreHunterData: Initialize Core Hunter data. coreHunterData: Initialize Core Hunter data. In corehunter: Multi-Purpose Core Subset Selection Description Usage Arguments Value See Also Examples Description The data may contain genotypes, phenotypes and/or a precomputed distance matrix. bc canada engineering