WebApr 10, 2024 · CTCF ChIP-seq . CTCF(CCCTC binding factor),是CTCF基因编码的转录因子 ,与绝缘子的活性相关。 CTCF蛋白在印记调控区域(imprinting control … WebMar 11, 2024 · To investigate dynamic CTCF occupancy during hematopoiesis, we performed CTCF chromatin immunoprecipitation sequencing (ChIP-seq) in mobilized peripheral blood CD34 + HSPCs, T cells (CD4 + and CD8 +), B cells, monocytes, and in vitro–differentiated erythroblasts from the same normal donor (Figure 1A; supplemental …
CCIP: predicting CTCF-mediated chromatin loops with transitivity
WebG1E_ER4_CTCF_chr19.fastqsanger A sample ChIP-seqdataset on CTCF in G1E_ER4 cells, reads have been reduced to those mapping to chr19 for demonstration use. G1E_ER4_input_chr19.fastqsanger ControlDNA taken from chr19. G1E_CTCF.fastqsanger CTCF Chip for G1Eline. G1E_input.fastqsanger Control for G1E line. Note:G1E cell lines … WebApr 10, 2024 · CTCF ChIP-seq . CTCF(CCCTC binding factor),是CTCF基因编码的转录因子 ,与绝缘子的活性相关。 CTCF蛋白在印记调控区域(imprinting control region,ICR)和分化甲基化区域1(differentially-methylated region-1,DMR1)和MAR3结合抑制胰岛素样生长因子2(Igf2)基因的过程中起重要作用 ... greer scott law
CTCF - 维基百科,自由的百科全书
WebFeb 26, 2024 · Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) is a simple protocol for detection of open chromatin. Computational footprinting, the search for regions with depletion of cleavage events due to transcription factor binding, is poorly understood for ATAC-seq. We propose the first footprinting method considering ATAC … WebJan 7, 2024 · RNA-seq and ChIP-seq (H3K27me3, H3K9ac, H3K4me3 and CTCF) profiles of adjacent, transcriptionally active (green highlight) and silenced (red highlight) regions … WebMar 9, 2024 · CTCF binding sites showed a very high ratio of intraCpG hemi over intraCpG me (fig. S7A). CTCF/cohesin binding sites orchestrate three-dimensional chromatin interactions across the mammalian genome . We then developed nasChIP-seq to map the binding landscape of CTCF and SMC1A (a cohesin subunit) on nascent chromatin in H9 … foc1113 invalid control command