Snaphic2

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August undefined, 2024

WebMing Hu, PhD Associate Staff. Lerner Research Institute, 9500 Euclid Avenue, Cleveland, Ohio 44195 Hu Laboratory Web4 Oct 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data Computational and Structural Biotechnology Journal June 1, 2024 See publication Leveraging TOPMed imputation server and...

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WebNumber: Citing Articles: 1: Zhao S, Hong CKY, Myers CA, Granas DM, White MA, Corbo JC, Cohen BA. A single-cell massively parallel reporter assay detects cell-type-specific gene re WebSingle-cell Hi-C provides a holistic high-resolution view into the 3D structure of our genetic blueprint. (Left) DNA fluorescence in situ hybridization (FISH) provided the first look into genome organization in the cell nucleus by directly measuring 3D coordinates (i.e., x, y, and z) of various genomic loci (or entire chromosomes, in the case of chromosome painting) … peggy yost meigs county ohio

Mapping chromatin loops in single cells - ScienceDirect

Web18 Aug 2024 · This review of genome-wide assays for chromatin interactions in single cells highlights recent advances in methods for the interpretation of single-cell genomic contacts and outlines frontiers for future development in this rapidly moving field. Abstract Over the past decade, genome-wide assays for chromatin interactions in single cells have enabled … WebBold list Hu lab members. First author and corresponding author papers 29. Rosen J*, Lee L*, Abnousi A, Chen J, Wen J, Hu M# and Li Y# (2024). HPTAD: a computational method to identify topologically associating domains from HiChIP and PLAC-seq data. Computational and Structural Biotechnology WebSnapHiC2: a computationally efficient loop caller for single cell Hi-C data. Computational and Structural Biotechnology Journal. 20:2778-2783. *Co-first author. #Co-corresponding author. 25. Huang L*, Yang Y*, Li G, Jiang M, Wen J, Abnousi A, Rosen J, Hu M# and Li Y# (2024). A systematic evaluation of Hi-C data enhancement methods for enhancing ... peggy yousif

Single-cell Hi-C data analysis: safety in numbers

WebXia Y, He X, Renshaw L, Martinez-Perez C, Kay C, Gray M, Meehan J, Parker JS, Perou CM, Carey LA, Dixon JM, Turnbull A. Integrated DNA and RNA Sequencing Reveals Drivers of Endocrine Resistance in Estrogen Receptor-Positive Breast Cancer. Clin Cancer Res 2024 08 28:3618-3629 PMID: 35653148 DOI: 10.1158/1078-0432.CCR-21-3189. Web19 Jun 2024 · Department of Genetics faculty, postdocs, students and collaborators published 16 papers during June 5 th – 18 th, 2024. SnapHiC2: A computationally efficient loop caller for single cell Hi-C data. Comput Struct Biotechnol J. 2024 Jun 1;20:2778-2783. doi: 10.1016/j.csbj.2024.05.046. eCollection 2024. meats restauranrt in keysWeb1 Jul 2014 · Objective Neurodevelopmental disorders presumably involve events that occur during brain development. The authors hypothesized that neuropsychiatric disorders considered to be developmental in etiology are associated with susceptibility genes that are relatively upregulated during fetal life (i.e., differentially expressed). Method The authors … meats service s.r.l

"WebHere we present SnapHiC2, an efﬁcient chromatin loop caller for scHi-C data. Compared to SnapHiC, SnapHiC2 achieves more than 3X speed up and saves 70% memory usage, making the identiﬁcation ... " - Snaphic2

Snaphic2

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WebI am now an Assistant Staff at Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation. I am also an Assistant Professor (non-tenure track) at Department of Medicine, Cleveland Clinic Lerner College of Medicine at Case Western Reserve University, an Associate Member of Molecular Oncology Program at Case … Web1 Jun 2024 · SnapHiC2 can identify 5Kb resolution chromatin loops with high sensitivity and accuracy and help to suggest target genes for GWAS variants in a cell-type-specific manner.

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Web1 Apr 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data. Li X, Lee L, Abnousi A, Yu M, Liu W, Huang L, Li Y, Hu M. Comput Struct Biotechnol J, 20:2778-2783, 01 Jun 2024 Cited by: 2 articles PMID: 35685374 … WebBPG is committed to discovery and dissemination of knowledge About the Journal; Submit a Manuscript; Current Issue; JOURNAL HOME

Web26 Aug 2024 · SnapHiC-D, a computational pipeline to identify differential chromatin contacts (DCCs) between two scHi-C datasets, is presented and it is demonstrated that DCCs detected in the cortical and hippocampal cell types are generally correlated with cell-type-specific gene expression patterns and epigenomic features. PDF.

WebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu Computational and Structural Biotechnology Journal 20, 2778-2783... Web1 Jan 2024 · SnapHiC2 uses sliding windows and reduces both computing time and memory by 70%. SnapHiC2 can identify 5 Kb resolution chromatin loops with high sensitivity and accuracy. SnapHiC2 can help to predict putative target genes of GWAS variants in a cell-type-specific manner.

Web1 Jul 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data 2024, Computational and Structural Biotechnology Journal Show abstract Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants 2024, Frontiers in Cell and Developmental Biology

WebThe Virtual Health Library is a collection of scientific and technical information sources in health organized, and stored in electronic format in the countries of the Region of Latin America and the Caribbean, universally accessible on the Internet and compatible with international databases. meats shirtWebPublications of the Li Group Google Scholar PubMed Search preprint 2024 2024 2024 2024 2024 2024 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 Lab Member; *: First or co-first Author; #: Corresponding or co-corresponding author preprint. Chen J, Luo T, Jiang M, Liu J, Gupta GP#, Li Y#(2024+) Cell composition inference and identification of … meats sandwichWebNuclear condensates of YAP fusion proteins alter transcription to drive ependymoma tumourigenesis. meats served at christmasWebUse the gear icon on the search box to create complex queries peggy yoga arthritisWeb1 Jun 2024 · Here we introduce SnapHiC2, which adapts a sliding window approximation when imputing missing contacts in each single cell and reduces both memory usage and computational time by 70%. SnapHiC2 can identify 5 Kb resolution chromatin loops with high sensitivity and accuracy and help to suggest target genes for GWAS variants in a cell … peggy young facebookWebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data Overview of attention for article published in Computational and Structural Biotechnology Journal, January 2024 Altmetric Badge meats rich in vitamin aWebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data. X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu. Computational and Structural Biotechnology Journal 20, 2778-2783, 2024. 3: 2024: SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data. peggy zartman friend facebook